ملف:DNA Ligase.jpg

/****** Jmol Embedded Script ****

1. Jmol state version 12.0.39 2011-02-04 07:47;

function _setWindowState() {

1. height 759;
2. width 1436;

 stateVersion = 1200039;
 background [xffffff];
 axis1Color = "[xff0000]";
 axis2Color = "[x008000]";
 axis3Color = "[x0000ff]";
 set ambientPercent 45;
 set diffusePercent 84;
 set specular true;
 set specularPercent 22;
 set specularPower 40;
 set specularExponent 6;
 set zShadePower 1;
 statusReporting  = true;

}

function _setFileState() {

 set allowEmbeddedScripts false;
 set appendNew true;
 set appletProxy "";
 set applySymmetryToBonds false;
 set autoBond true;
 set bondRadiusMilliAngstroms 150;
 set bondTolerance 0.45;
 set defaultLattice {0.0 0.0 0.0};
 set defaultLoadFilter "";
 set defaultLoadScript "";
 set defaultVDW Auto;
 set forceAutoBond false;
 #set defaultDirectory "C:/Users/Lab/Desktop/jmol-12.0.39";
 #set loadFormat "http://www.rcsb.org/pdb/files/%FILE.pdb.gz%22;
 #set smilesUrlFormat "http://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&get3d=True%22;
 #set edsUrlFormat "http://eds.bmc.uu.se/eds/dfs/%LC13/%LCFILE/%LCFILE.omap%22;
 #set edsUrlCutoff "load('http://eds.bmc.uu.se/eds/dfs/%LC13/%LCFILE/%LCFILE.sfdat').lines.find('MAP_SIGMA').split(' ')[2]";
 set legacyAutoBonding false;
 set minBondDistance 0.4;
 set minimizationCriterion  0.0010;
 set minimizationSteps  100;
 set pdbGetHeader false;
 set pdbSequential false;
 set percentVdwAtom 23;
 set smallMoleculeMaxAtoms 40000;
 set smartAromatic true;
 load auto /*file*/"./1X9N.pdb";

}

function _setVariableState() {

  set defaultanglelabel "%VALUE %UNITS";
  set defaultcolorscheme "Jmol";
  set defaultdistancelabel "%VALUE %UNITS";
  set defaultdrawarrowscale 0.5;
  set defaultlattice "{0 0 0}";
  set defaultloadfilter "";
  set defaultloadscript "";
  set defaulttorsionlabel "%VALUE %UNITS";
  set defaulttranslucent 0.5;
  set defaultvdw "Auto";
 set allowembeddedscripts true;
 set allowrotateselected false;
 set appletproxy "";
 set applysymmetrytobonds false;
 set atompicking true;
 set atomtypes "";
 set autobond true;
 set autofps false;
 set axes window;
 set axesmode 0;
 set axesscale 2.0;
 set bondmodeor false;
 set bondradiusmilliangstroms 150;
 set bondtolerance 0.45;
 set cartoonbaseedges false;
 set cartoonrockets false;
 set chaincasesensitive false;
 set dataseparator "~~~";
 set defaultstructuredssp true;
 set delaymaximumms 0;
 set dipolescale 1.0;
 set disablepopupmenu false;
 set displaycellparameters true;
 set dotdensity 3;
 set dotscale 1;
 set dotsselectedonly false;
 set dotsurface true;
 set dragselected false;
 set drawhover false;
 set drawpicking false;
 set dsspcalculatehydrogenalways true;
 set dynamicmeasurements false;
 set ellipsoidarcs false;
 set ellipsoidaxes false;
 set ellipsoidaxisdiameter 0.02;
 set ellipsoidball true;
 set ellipsoiddotcount 200;
 set ellipsoiddots false;
 set ellipsoidfill false;
 set forceautobond false;
 set fractionalrelative false;
 set gestureswipefactor 1.0;
 set greyscalerendering false;
 set hbondsangleminimum 90.0;
 set hbondsbackbone false;
 set hbondsdistancemaximum 3.25;
 set hbondsrasmol true;
 set hbondssolid false;
 set helixstep 1;
 set helppath "http://chemapps.stolaf.edu/jmol/docs/index.htm%22;
 set hermitelevel 0;
 set hidenameinpopup false;
 set hidenavigationpoint false;
 set highresolution false;
 set historylevel 0;
 set hoverdelay 0.5;
 set imagestate true;
 set iskiosk false;
 set isosurfacepropertysmoothing true;
 set justifymeasurements false;
 set loadatomdatatolerance 0.01;
 set measureallmodels false;
 set measurementlabels true;
 set messagestylechime false;
 set minbonddistance 0.4;
 set minimizationcriterion 0.0010;
 set minimizationrefresh true;
 set minimizationsilent false;
 set minimizationsteps 100;
 set monitorenergy false;
 set multiplebondradiusfactor 0.0;
 set multiplebondspacing -1.0;
 set navigatesurface false;
 set navigationperiodic false;
 set navigationspeed 5.0;
 set pdbgetheader false;
 set pdbsequential false;
 set percentvdwatom 23;
 set pickingspinrate 10;
 set picklabel "";
 set pointgroupdistancetolerance 0.2;
 set pointgrouplineartolerance 8.0;
 set propertyatomnumbercolumncount 0;
 set propertyatomnumberfield 0;
 set propertycolorscheme "roygb";
 set propertydatacolumncount 0;
 set propertydatafield 0;
 set quaternionframe "p";
 set rangeselected false;
 set ribbonaspectratio 16;
 set ribbonborder false;
 set rocketbarrels false;
 set saveproteinstructurestate true;
 set selectallmodels true;
 set selecthetero true;
 set selecthydrogen true;
 set sheetsmoothing 1.0;
 set showhiddenselectionhalos false;
 set showhydrogens true;
 set showkeystrokes true;
 set showmeasurements true;
 set showmultiplebonds true;
 set shownavigationpointalways false;
 set slabbyatom false;
 set slabbymolecule false;
 set smallmoleculemaxatoms 40000;
 set smartaromatic true;
 set solventprobe false;
 set solventproberadius 1.2;
 set ssbondsbackbone false;
 set stereodegrees -5;
 set strandcountformeshribbon 7;
 set strandcountforstrands 5;
 set strutdefaultradius 0.3;
 set strutlengthmaximum 7.0;
 set strutsmultiple false;
 set strutspacing 6;
 set testflag1 false;
 set testflag2 false;
 set testflag3 false;
 set testflag4 false;
 set tracealpha true;
 set usearcball false;
 set useminimizationthread true;
 set usenumberlocalization true;
 set vectorscale 1.0;
 set vibrationscale 0.5;
 set wireframerotation false;
 set zoomlarge true;

1. label defaults;

 select none;
 color label none;
 background label none;
 set labelOffset 4 4;
 set labelAlignment left;
 set labelPointer off;
 font label 13.0 SansSerif Plain;

}

function _setModelState() {

 select ({0:203 222:5729});
 color atoms opaque structure;
 Spacefill 0.0;
 select BONDS ({0 20:5927});
 wireframe 0.0;

 measures delete;
 select *; set measures nanometers;
 font measures 15.0 SansSerif Plain;

 select ({0:203 222:5729});
 Cartoon on;

 boundBox off;
 font boundBox 14.0 SansSerif Plain;
 boundBox off;

 unitcell off;
 font unitcell 14.0 SansSerif Plain;
 unitcell off;

 hover "%U";

 frank on;
 font frank 16.0 SansSerif Bold;
 select *;

}

function _setPerspectiveState() {

 set perspectiveModel 11;
 set scaleAngstromsPerInch 0.0;
 set perspectiveDepth true;
 set visualRange 5.0;
 set windowCentered false;
 set cameraDepth 3.0;
 boundbox corners {6.1949997 2.3970032 9.877998} {82.689 67.995995 83.834} # volume = 371106.0;
 center {39.604 40.545002 57.128998};
 moveto -1.0 {0 0 1 0} 100.0 0.0 0.1 {44.442 35.1965 46.856} 46.176907 {0.0 0.0 0.0} 0.0 0.0 0.0;
 save orientation "default";
 moveto 0.0 {0 0 1 0} 67.3 0.0 0.0 {39.604 40.545002 57.128998} 46.176907 {0.0 0.0 0.0} -25.773369 49.92087 0.0;;
 slab 100;depth 0;
 set spinX 0; set spinY 30; set spinZ 0; set spinFps 30;  set navX 0; set navY 0; set navZ 0; set navFps 10;

}

function _setSelectionState() {

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4481:4487 4489:4496 4498:4504 4506:4513 4515:4522 4524 4525 4528:4530 4532:4538 4540:4542 4544:4550 4552 4553 4556:4558 4560:4562 4564:4569 4571:4573 4575 4576 4579:4581 4583 4585:4588 4590:4596 4598 4599 4602:4604 4606:4612 4614:4619 4621:4626 4628:4634 4636:4638 4640:4643 4645:4651 4653:4655 4657:4663 4665:4667 4669:4678 4680:4682 4684:4691 4693:4702 4704:4707 4709:4711 4713:4722 4724:4730 4732:4734 4736:4738 4740:4742 4744:4753 4755:4761 4763:4769 4771:4774 4776 4778:4780 4782:4788 4790:4792 4794 4795 4798:4800 4802:4804 4807:4809 4811 4812 4815:4817 4819 4821:4823 4825:4827 4830:4832 4834:4836 4839:4841 4843:4849 4851:4853 4855:4858 4860:4863 4865:4871 4873:4877 4879:4886 4888:4894 4896:4898 4900 4902:4905 4907:4909 4911:4920 4922 4924:4926 4928 4929 4932:4934 4936:4938 4941:4943 4945:4947 4950:4952 4954:4960 4962:4964 4967:4969 4971:4974 4976:4984 4986:4994 4996:4998 5000:5003 5005 5007:5009 5011:5017 5019:5026 5028:5031 5033:5039 5041:5046 5048:5054 5056:5061 5063 5065:5067 5069:5074 5076:5085 5087:5092 5094:5100 5102:5104 5106:5111 5113:5122 5124:5130 5132 5133 5136:5138 5140:5142 5144:5147 5149:5154 5156:5162 5164:5169 5171 5172 5175:5177 5179:5187 5189:5201 5203:5209 5211 5212 5215:5217 5219:5224 5226 5228:5230 5232:5235 5237:5242 5244:5256 5258:5260 5263:5265 5267:5272 5274:5281 5283:5287 5289:5292 5294 5295 5298:5300 5302:5308 5310 5312:5314 5316:5322 5324 5326:5328 5330:5335 5337:5343 5345:5351 5353:5355 5357:5362 5364:5367 5369:5372 5374:5377 5379:5381 5383:5389 5391:5396 5398 5399 5402:5404 5406 5408:5410 5412 5413 5416:5418 5420:5427 5429:5431 5433:5439 5441 5443:5445 5447:5453 5455:5464 5466:5475 5477:5482 5484:5493 5495:5504 5506:5512 5514:5523 5525:5530 5532:5541 5543:5545 5548:5550 5552 5553 5556:5558 5560:5567 5569:5571 5573:5576 5578:5583 5585:5587 5590:5592 5594:5596 5598:5601 5603:5606 5608 5610:5613 5615 5617:5620 5622 5624:5626 5628:5631 5633:5635 5637:5640 5642:5647 5649:5652 5654:5658 5660:5666 5668:5674 5676:5678 5680:5689 5691:5694 5696:5698 5700:5703 5705});
 set hideNotSelected true;

}

function _setState() {

 initialize;
 set refreshing false;
 _setWindowState;
 _setFileState;
 _setVariableState;
 _setModelState;
 _setPerspectiveState;
 _setSelectionState;
 set refreshing true;
 set antialiasDisplay false;
 set antialiasTranslucent true;
 set antialiasImages true;

}

_setState;

• • /